There is a proposal to change the Student Seminars schedule so that students speak at their home location. This will result in fewer physics students speaking downtown and fewer biology students speaking uptown. Both locations will still have talks from senior PhD students, 2nd year students and 1st year students. Additional comments can be posted as a comment to this post or emailed to mbpgsu@gmail.com.
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Ah, the zombie apocalypse, truly the escapist fantasy of our generation. For what young man has not envisioned himself walking through a barren husk of a metropolis, brandishing a shotgun in one hand and a lobotomizer in the other, wearily preparing to stand off against undead, savage, cannibalistic automatons, whilst defending what remains of humanity? Oh the repugnant joy we would feel as we claw and hack at the onslaught of mindless, decaying, and once normal humans, while they suffocate us with their numbers and brain-thirst, and shower us and our party with their blood and viscera drawn out by our shotgun blasts.
Okay, that is probably enough, but the zombie nation does seem to have a lot of appeal in our current mainstream culture. Everything, from B-movies, and comic books, to adaptations of classic literature seem to explore the possibilities of a world overrun with the undead, and there does not seem to be any end in its popularity. Perhaps it is because the zombie apocalypse is the ultimate metaphor for individuality: the lone freethinking individual must battle against waves of mindless drones unable to overcome the monotony of their lives. Or maybe it is because the unrelenting gore satisfies some primal bloodlust skulking within all of us. Regardless of the reason, we love the geek show.
Currently, AMC is airing the series “The Walking Dead,” which explores the lives of several survivors as they hobble for safety in zombie-ravaged Georgia. The show just completed its first, six-episode, season and plans on airing its second, twelve-episode, season this fall. With the longer format, the show is able to explore its characters in greater detail, rather than casting out un-compelling stock characters to be knocked off one by one, which is usually the case in zombie films. You get to know the characters a lot better, and get to feel for them. It is fascinating to explore how human beings would react when pushed to the brink. You can explore some tough facets of human nature, while preventing things from getting too grave by having this fantastic central element. You can have a scene of two sisters discussing the grief over the loss of their father, followed by a scene of a zombie getting decapitated by a shovel. This is appealing to me, because I can indulge in melodrama without being bored by the long expositions, or being depressed by the harsh realities of the real world. Nothing needs to be real except for the emotions and reactions of the characters.
There is one big drawback however. Ultimately, there is not a lot for the characters to do but to run and hide, from campsite to compound to campsite. They just sit around waiting for the zombies to attack, then the zombies attack, and they move to the next campsite. On top of that, they do not have much to do in a day other than sit around, or go fishing. There is no intriguing plot device to propel the plot forward, and no fascinating antagonist, with zombies having absolutely nothing interesting to say. All they do is shuffle forward, moan, and chew. I fear it will get very boring over time. In fact, boredom was a key theme in “Dawn of The Dead,” which was the progenitor of the zombie subgenre, and to me, it seems a daunting task for the creators and the writers to keep the show fresh and interesting. I feel like there are already signs of the writers struggling with the finale of the first season featuring a timer that comes out of nowhere counting down to an explosion from which the survivors all of a sudden have to escape (oh, and how about this for a medical device?) It seemed like a lazy plot device to move things along, and I hope twelve episodes do not prove to be too much for the writers. It would be really terrible if this punk metaphor against the mindless monotonies of developed society becomes tedious and boring.
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Hello MBP students,
It has been a great year full of satisfactions and significant achievements. The MBP website was on life support before we took it over and generated some excitement around it, with periodic blog posts, pictures, polls, and much more.
We are now recruiting for our chief-editor position. Time commitment is minor (flexible but generally 1-2 hours per week). We are looking for motivated individuals with good communication and organizational skills.
Responsibilities (general):
- Create blog content that will interest MBP students
- Review and edit other bloggers' posts
- Suggest topics to be covered by the MBP blog team
- Recruit new bloggers and invite guest contributors on a regular basis
- Cover MBP events (via posts or pictures)
- Continue the vision of creating a platform for MBP students to share interesting topics and discuss relevant issues
Benefits of This Position:
- Develop leadership and communication skills applicable to any field or career choice
- Improve your own writing skills
- Add value to your CV and scholarship applications with leadership and communication experience
- Network with departmental and university personnel
- Operate in a positive environment filled with like-minded and passionate students
- Tremendous autonomy to pursue new goals for the MBP blog
Please send an email to webmaster@mbpgsa.ca expressing your interest for this position, by June 30.
Read Moreby Haydn Liang
Graduate Research in Sunnybrook vs. Downtown
Almost all graduate programs in the faculty of medicine are research-based. Most of this work is carried out in hospital research centres or at research facilities on the University of Toronto campus. While most hospital laboratories are close to the university in downtown Toronto, there is also a major hub of research located uptown at Sunnybrook Research Institute. This creates considerable problems for students looking to work with a professor with a project of their interest as significant cutting edge research is conducted at Sunnybrook, notably in the field of medical imaging.
With all these choices available to graduate students, where should you choose to do your graduate work? On one hand working in downtown puts students close to where they might want to take courses and pursue extracurricular endeavours and join student unions; on the other hand many projects at Sunnybrook are at the leading edge of scientific innovation. To make this decision more balanced, Sunnybrook also offers students a free shuttle bus between the hospital and downtown. It runs from 6am to 6pm and takes about 30 minutes to bring you Women’s College, 1 block east of Queen’s park station.
At the end of the day, it’s really all about what you feel is important though personally: the thought of working on a project that you are not really interested in for no less than a few years makes for a very painful graduate school experience.
(Haydn Liang is a PhD candidate in MBP in the biology stream who conducts his research at Sunnybrook Hospital, if you have questions for him you can contact him at Haydn.Liang at utoronto ca - Ed. Samuel Oduneye)
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The BIXI bike-sharing program, first introduced in Montréal, made its official debut in Toronto on May 3rd. To date, the program is slated to offer 1000 bikes, spread over 80 stations in the downtown core. Here is a quick run-down of how BIXI works for those not familiar with it:
The premise behind it is quite simple. When you need a bike, you can sign it out from the station, use it for a 30 minute trip, then drop it off at another BIXI parking spot. You do not need to sign up for a membership in order to enjoy a BIXI ride, although if you plan on using it more than a few times, getting a monthly or yearly subscription might be more economical. $5 will get you 24-hour access, a 30-day subscription is $40, and $95 will get you access to BIXI’s for a full year.
One of the main advantages of BIXI is that you get to enjoy all of the benefits of riding a bike without actually having to own one and worry about its up-keep and potential theft. However, the success of the program and the willingness of Torontonians to buy into this new biking culture will depend on several factors. The first and arguably most important factor is the location of BIXI stations. Currently, they are mainly clustered in the downtown area, meaning that unless you live or work close to one of these stations, BIXI is not a viable transportation alternative. Plans are in the works to expand the program, but this will depend on its initial success. Second, unlike in Montréal where the development of BIXI went hand in hand with the expansion of bike lanes, riders in Toronto will have to dangerously compete with motor vehicles for driving space. Therefore, safety concerns of riders will need to be properly addressed by the city if the program is to have any chance of attracting a wider audience.
In conclusion, although BIXI bikes may not be the most nimble bikes around (at a hefty 22 kilograms), their availability and convenience of use make them an attractive mode of transportation, just in time for you to enjoy the warmth of the coming months.
Read MoreRick Mercer's rant from the 2008 federal election still rings true this time around. The interests of students are once again underrepresented in federal politics. The word "tuition" wasn't even mentioned in this year's English language debate, let alone the idea of improving federal funding for graduate studies. Are you satisfied with the current level of federal government support for post-secondary education? If not, take a few minutes to call/email your local candidates and ask them what they (and their party) plan to do to make post-secondary education more accessible. Evaluate how genuine/realistic/existent their plans are and make an informed decision. VOTE on May 2!
http://www.youtube.com/v/UOWtXc2dUHw?fs=1&hl=en_US
Read More9:30 am.
Coffee at hand, ready to face the last day before the long weekend. Opened inbox and among the long list of unread emails, I noticed a new Nature Alert. I subscribed to the weekly alerts about a year ago and most of the times I find it an effective tool to keep myself in the loop... not only in my particular research field of interest, but other science-related fields like Physical Sciences, Earth and Environmental Sciences, Careers & Jobs, etc.
Under the latter section I found an interesting article on the value of a PhD degree. I thought to myself, "ah, they're probably saying that there are too many out there and that they are not worth what they were worth before"... I was right.
But what caught my attention, at a first glance, was the fact that the author compared PhD's to mushrooms: "you can grow PhD's like mushrooms". Granted the author was quoting a doctor researching doctoral-education trends; nonetheless I was intrigued, so I kept reading.
This article basically states what everyone already knows, but it also suggests a couple of solutions that might target the root of the problem: the fact that PhD students are seen as cheap labour by supervisors and as source of governmental income by institutions.
Short and to the point, this article also refers to a couple of articles in Nature's latest issue that analyze the latest PhD trends and suggest further action by the government and the students themselves.
In my opinion, we are only able to sow what we harvest. So even though the number of PhD degrees is proliferating like mushrooms, it is up to us to excel in our fungi world and decidedly become the cream of the mushroom crop.
Read MoreBy Alison Aiken This post highlights the work of Ryan Draker from Dr. Peter Cheung’s lab, published earlier this year in Nucleic Acids Research (PMID: 21245042) [Link to Paper].
In order for DNA to fit into cells, it gets coiled around octamers of small, positively charged proteins: the histones. Two each of histones H2A, H2B, H3 and H4 form the core of the nucleosome, around which DNA is coiled. Variant histones, which can differ significantly from core histones in their amino acid composition, can replace core histones in the nucleosome and are normally deposited in specific regions. A variant of H2A, H2A.Z, has been implicated in several cellular processes, including the regulation of transcription. Interestingly, H2A.Z can have either a positive or negative influence on gene transcription. This histone variant can be post-translationally modified by either acetylation or mono-ubiquitylation. Previous work by the Cheung lab has shown that H2A.Z is ubiquitylated by Ring1b, an E3 ligase that is part of the Polycomb Repressive Complex 1, and that mono-ubiquitylated H2A.Z is associated with transcriptionally inactive chromatin. The authors hypothesize, therefore, that the deubiquitylase(s) for H2A.Z would play an important role in the activation of transcription.
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Anyone who has ever seen the movie "There's Something About Mary" will surely remember the hilarious yet cringe-worthy scene at the beginning when Ben Stiller's character get his...ummm...male parts disastrously stuck in the zipper of his pants. It's basically every man's worst nightmare (aside from a knife-wielding Lorena Bobbitt).
Well, it turns out that instances of penile entrapment in zippers is fairly common in children. A fairly recent publication (Indian Pediatrics, 43: 252-254, 2006) by Dr. Satish Chandra Mishra points out that "entrapment of the unprotected penis into the zipper is the most common cause of prepuceal injury in children." Wow. But surely there's something that can be done about this, right?
Don't worry, dear reader - there most certainly is. Dr. Mishra has perfected a technique that should bring sighs of relief to young children the world over. It's a simple 2-step approach that will hopefully become a part of the medical school curriculum from now on:
Step 1: Using an ordinary wire-cutter, make two transverse cuts into the two unzipped halves of the pants just ahead of the entrapped skin. Then make cuts laterally down the cloth along the tooth lines of the zipper.
Step 2: Next, using a pair of pliers, simply grip the zip-fastener very tightly, applying strong compression. The entrapped skin should be released instantaneously.
The bonuses of this method include: (i) relatively short time scale needed to complete the procedure, (ii) no messy mineral oil need be applied the local area, and (iii) no local anaesthesia need be administered.
There ya go gentlemen. There is now no need to buy only button-up jeans, or to lay awake at night, afraid to fall asleep because nightmarish zippers haunt your dreams. Sleep easy.
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Every year, in April, people gather together to plant trees at Downsview park. This year the event took place on Sunday April 17th. Despite the snow, hail and strong wind, many enthusiasts showed up to take part in creating a beautiful park. I’d like to share some highlights and pictures with you.
I came with the New Acropolis School of Philosophy to practice the philosophy in action. As my teachers say: “Philosophers don’t just dream about the better world, they act to make it better!” We really had to use our will, discipline and enthusiasm to enjoy tree planting regardless of external circumstances. And it was truly a wonderful experience! Our boots and clothes were covered in mud, but we left feeling happy. I would definitely do this again!
I think it would be great if MBP could participate next year. May be, plan it as an event? I will not be a part of MBP at that time, but I will be really glad to see you guys there!
Upcoming philosophy-related events:
Machu Picchu seminar: http://toronto.newacropolis.ca/events/machu_picchu/
Wake up! Active Philosophy Workshop: http://toronto.newacropolis.ca/workshops/wakeup/
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Bullet-proof your resume. In addition to journal publications, posters and oral presentations constitute yet another way of bolstering your academic C.V. Rome was not built in a day, and neither is a great resume, so don’t miss this opportunity.
Hone your presentation skills. Being able to convey your ideas and findings in an eloquent and concise manner is an integral part of being a successful researcher. The JLM Research Symposium presents a unique opportunity for MBP students (especially first years!) to confront their fears of public speaking and practice presenting to a diverse scientific audience (hint: think MBP seminars!)
Compete for prizes. Veterans of the scientific conference circuit will also get a chance to square off against past and new challengers. Prizes (and bragging rights) will be awarded for best poster, as well as best MSc and PhD oral presentations.
Peer feedback/Showcase your research. Participation will also enable you to garner valuable feedback from your fellow peers. Getting an outsider’s perspective is sometimes what is needed to get you thinking outside of the box.
Note: Abstract submission will be open from April 4 - May 18. Fill out the registration form and submit your abstracts (500 words or less) either to jlm.symposium@gmail.com or through our online form.
Read MoreBy Greg Anderson This post highlights some excellent recent work published by MBP student Monique Rennie at the Mouse Imaging Centre (MICe). The full article is published as Rennie et al., Am J Physiol Heart Circ Physiol 300: H675-H684, 2011.
At least once a day, I find myself in a state of shock-and-awe as I witness someone my own age or younger smoking a cigarette. For some reason, this is more surprising to me than, say, a 60-year old man smoking. It's not as though anyone born post-1980 doesn't know about the dangers of smoking; it's been drilled into our heads from a very young age. Yet the habit persists. Maybe not as many people smoke now as opposed to 1960, but still, the tradition lingers. And now, here to shed more light on the dangers of pre-pregnancy smoking comes new research conducted by members of the Medical Biophysics department.
Polycyclic aromatic hydrocarbons (PAHs) are the main toxic components of cigarettes, in addition to being common environmental pollutants. The negative effects of PAHs on growing fetuses is perhaps their most devastating feature: exposure can lead to fetal growth restriction, reduced fetoplacental blood flow, and a whole host of other morbidities. So while the proportion of women who smoke during pregnancy has dramatically decreased in recent decades, it turns out that this may not be enough. You see, PAHs have the uncanny ability to accumulate in both adipose and mammary tissue of smokers, thus allowing the toxic chemicals to be released into the blood stream during pregnancy. However, there is a scarcity of information on the actual effects of PAH accumulation on pregnancy outcomes in the literature. Thus, Monique and her team set out to try to get to the bottom of some of these nagging questions, using some very sophisticated and novel imaging techniques. "This is a fantastic paper (not to toot my own horn), because those who care only about imaging physics will find it interesting just as much as those who only care about the biological effects of smoking on pre-pregnancy fetuses will" says Monique (after being cornered by yours truly).
Using micro-computed tomography (micro-CT) and some novel vessel tracking software developed by Dr. John Sled, Monique has shown that it's possible to image the growing vasculature of the placenta and to quantify many physical characteristics of these blood vessel trees. In fact, using this vessel tracking software, the number, physical dimensions, and physical characteristics (such as blood pressure) of the developing placental vasculature can be accurately determined. This is an extremely important step in the field of developmental biology, as it allows this field to rely less on qualitative, descriptive science and turns it into a more quantitative and numbers-driven science. As well, the ability to manipulate these vascular trees in 3 dimensions is extremely advantageous, as questions of form and function can now begin to be answered.
Mice in this study were injected with either corn oil (control) or PAHs over a 9-week period to simulate smoking the equivalent of 7 cigarettes a day in humans. Following the last PAH administration, the female mice were then mated with normal male mice, and their fetuses were dissected at embryonic day 15.5 (this is close to the end of pregnancy; most mice have a gestation period of approximately 18-20 days). Following micro-CT analysis, some extremely interesting results were obtained. Compared to control mice, the PAH-treated mice had placental vasculatures that were normal in size (i.e. the span and depth), but that had a 27% reduction in the number of arteriole-sized blood vessels within the vascular tree. The absence of this vast a number of arterioles in the vascular tree led to a subsequent 30% increase in fetoplacental arterial vascular resistance (which is very harmful to the developing fetus as it corresponds to a 19% decrease in umbilical blood flow), as well as leading to an increase in tortuosity of the vascular tree itself. Both of these factors contribute to fetal weight restriction. What would be interesting to see is how the pups born of these PAH-treated mothers would respond to cognitive tasks later in life.
So there you have it: even quitting smoking before becoming pregnant can have dire consequences on the health of unborn children. Using sophisticated, in-house generated computer algorithms, Monique has been able to show that PAHs can negatively affect the placental vasculature not by necessarily changing its size, but by causing it to become more sparse, thus leading to increased vascular resistance. As an imaging paper, this study helps transform developmental biology into a more quantifiable and definitive science (as well as providing biologists with images that truly make one say, "wow"); as a biological paper, this study sheds even more light onto the devastating side-effects of smoking by providing clear, quantitative results. Truly this is the type of work that defines "medical biophysics", and reflects the unique nature of our department. As if anyone needed more reasons to quit smoking, now we're reminded of Helen Lovejoy's' famous Simpsons quote: "Won't somebody please think of the children!?"
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